Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs1952164 chr14:34220213 A/G 6.99E-9 178 25.47 25.75 6.03 KM Plot
PCPG rs1960813 chr3:80579206 T/C 6.9E-5 176 19.53 24.53 27.2 KM Plot
PCPG rs1963885 chr2:136553022 G/C 3.02E-5 175 9.72 23.77 25.67 KM Plot
PCPG rs1965106 chr3:136648607 T/C 0.000323 175 20.2 27.23 23.03 KM Plot
PCPG rs1967830 chr13:114166154 G/C 3.87E-12 178 24.17 29.95 3.32 KM Plot
PCPG rs1967831 chr13:114165831 A/T 3.87E-12 178 24.17 29.95 3.32 KM Plot
PCPG rs1967832 chr13:114165763 T/C 4.41E-12 177 24.17 30.33 3.32 KM Plot
PCPG rs1969089 chr17:50287448 C/A 6.66E-5 177 25.77 27.95 14.47 KM Plot
PCPG rs1971476 chr13:114148952 G/A 5.27E-12 176 24.23 29.57 3.32 KM Plot
PCPG rs1971477 chr13:114149181 C/T 5.27E-12 176 24.23 29.57 3.32 KM Plot
PCPG rs1976969 chr7:105157768 T/C 5.12E-5 178 20.2 29.43 2.28 KM Plot
PCPG rs1979493 chr17:3168579 A/C 0.00014 171 27.4 27.33 18.7 KM Plot
PCPG rs199544424 chr20:6028115 G/C 0 175 25.53 22.63 2.93 KM Plot
PCPG rs199554944 chr7:105155242 C/T 5.48E-5 177 20.2 30.45 2.28 KM Plot
PCPG rs1995996 chr2:107254858 G/A 0.000336 172 26.57 21.95 25.87 KM Plot